| 1 |
Rudd KE, Johnson SC, Agesa KM, et al. Global, regional, and national sepsis incidence and mortality, 1990-2017: analysis for the Global Burden of Disease Study [J]. Lancet, 2020, 395(10219): 200-211.
|
| 2 |
Zhou G, Zhou Y, Zhong C, et al. Retrospective analysis of 1, 641 cases of classic fever of unknown origin [J]. Ann Transl Med, 2020, 8(11): 690-690.
|
| 3 |
Pallen MJ. Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections [J]. Parasitology, 2014, 141(14): 1856-1862.
|
| 4 |
Zhu N, Zhang D, Wang W, et al. A novel coronavirus from patients with pneumonia in China, 2019 [J]. N Engl J Med, 2020, 382(8): 727-733.
|
| 5 |
Wilson MR, Naccache SN, Samayoa E, et al. Actionable diagnosis of neuroleptospirosis by next-generation sequencing [J]. N Engl J Med, 2014, 370(25): 2408-2417.
|
| 6 |
Miao Q, Ma Y, Wang Q, et al. Microbiological diagnostic performance of metagenomic next-generation sequencing when applied to clinical practice [J]. Clin Infect Dis, 2018, 67(suppl 2): S231-S240.
|
| 7 |
Salipante SJ, Hoogestraat DR, Abbott AN, et al. Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing [J]. J Clin Microbiol, 2014, 52(5): 1789-1792.
|
| 8 |
Somasekar S, Lee D, Rule J, et al. Viral surveillance in serum samples from patients with acute liver failure by metagenomic next-generation sequencing [J]. Clin Infect Dis, 2017, 65(9): 1477-1485.
|
| 9 |
Long SW, Olsen RJ, Christensen PA, et al. Sequence analysis of 20, 453 severe acute respiratory syndrome coronavirus 2 genomes from the Houston Metropolitan Area identifies the emergence and widespread distribution of multiple isolates of all [J]. Am J Pathol, 2021, 191(6): 983-992.
|
| 10 |
Schlaberg R, Chiu CY, Miller S, et al. Validation of metagenomic next-generation sequencing tests for universal pathogen detection [J]. Arch Pathol Lab Med, 2017, 141(6): 776-786.
|
| 11 |
Gu W, Miller S, Chiu CY. Clinical metagenomic next-generation sequencing for pathogen detection [J]. Annu Rev Pathol, 2019, 14(1): 319-338.
|
| 12 |
Wilson MR, Sample HA, Zorn KC, et al. Clinical metagenomic sequencing for diagnosis of meningitis and encephalitis [J]. N Engl J Med, 2019, 380(24): 2327-2340.
|
| 13 |
Yu G, Wang X, Zhu P, et al. Comparison of the efficacy of metagenomic next-generation sequencing and Xpert MTB/RIF in the diagnosis of tuberculous meningitis [J]. J Microbiol Methods, 2021, 180: 106124.
|
| 14 |
Xing XW, Zhang JT, Ma YB, et al. Metagenomic next-generation sequencing for diagnosis of infectious encephalitis and meningitis: a large, prospective case series of 213 patients [J]. Front Cell Infect Microbiol, 2020, 10: 88.
|
| 15 |
Hu B, Tao Y, Shao Z, et al. A comparison of blood pathogen detection among droplet digital PCR, metagenomic next-generation sequencing, and blood culture in critically ill patients with suspected bloodstream infections [J]. Front Microbiol, 2021, 12: 641202.
|
| 16 |
Grumaz S, Grumaz C, Vainshtein Y, et al. Enhanced performance of next-generation sequencing diagnostics compared with standard of care microbiological diagnostics in patients suffering from septic shock [J]. Crit Care Med, 2019, 47(5): e394-e402.
|
| 17 |
Jing C, Chen H, Liang Y, et al. Clinical evaluation of an improved metagenomic next-generation sequencing test for the diagnosis of bloodstream infections [J]. Clin Chem, 2021, 67(8): 1133-1143.
|
| 18 |
Hogan CA, Yang S, Garner OB, et al. Clinical impact of metagenomic next-generation sequencing of plasma cell-free dna for the diagnosis of infectious diseases: a multicenter retrospective cohort study [J]. Clin Infect Dis, 2020, 72(2): 239-245.
|
| 19 |
Rossoff J, Chaudhury S, Soneji M, et al. Noninvasive diagnosis of infection using plasma next-generation sequencing: a single-center experience [J]. Open Forum Infect Dis, 2019, 6(8): ofz327.
|
| 20 |
To RK, Ramchandar N, Gupta A, et al. Use of plasma metagenomic next-generation sequencing for pathogen identification in pediatric endocarditis [J]. Pediatr Infect Dis J, 2020, 40(5): 486-488.
|
| 21 |
Lee RA, Dhaheri FA, Pollock NR, et al. Assessment of the clinical utility of plasma metagenomic next-generation sequencing in a pediatric hospital population [J]. J Clin Microbiol, 2020, 58(7): e00419-e00420.
|
| 22 |
Cheng J, Hu H, Fang W, et al. Detection of pathogens from resected heart valves of patients with infective endocarditis by next-generation sequencing [J]. Int J Infect Dis, 2019, 83: 148-153.
|
| 23 |
Cai S, Yang Y, Pan J, et al. The clinical value of valve metagenomic next-generation sequencing when applied to the etiological diagnosis of infective endocarditis [J]. Ann Transl Med, 2021, 9(19): 1490-1490.
|
| 24 |
Blasi F, Garau J, Medina J, et al. Current management of patients hospitalized with community-acquired pneumonia across Europe: outcomes from REACH [J]. Respir Res, 2013, 14(1): 44.
|
| 25 |
van Boheemen S, van Rijn AL, Pappas N, et al. Retrospective validation of a metagenomic sequencing protocol for combined detection of RNA and DNA viruses using respiratory samples from pediatric patients [J]. J Mol Diagn, 2020, 22(2): 196-207.
|
| 26 |
Huang J, Jiang E, Yang D, et al. Metagenomic next-generation sequencing versus traditional pathogen detection in the diagnosis of peripheral pulmonary infectious lesions [J]. Infect Drug Resist, 2020, 13: 567-576.
|
| 27 |
Chen Y, Feng W, Ye K, et al. Application of metagenomic next-generation sequencing in the diagnosis of pulmonary infectious pathogens from bronchoalveolar lavage samples [J]. Front Cell Infect Microbiol, 2021, 11: 541092.
|
| 28 |
Li Y, Sun B, Tang X, et al. Application of metagenomic next-generation sequencing for bronchoalveolar lavage diagnostics in critically ill patients [J]. Eur J Clin Microbiol Infect Dis, 2019, 39(2): 369-374.
|
| 29 |
Langelier C, Kalantar KL, Moazed F, et al. Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults [J]. Proc Natl Acad Sci U S A, 2018, 115(52): e12353-e12362.
|
| 30 |
Zhou H, Larkin PMK, Zhao D, et al. Clinical impact of metagenomic next-generation sequencing of bronchoalveolar lavage in the diagnosis and management of pneumonia [J]. J Mol Diagn, 2021, 23(10): 1259-1268.
|
| 31 |
Charalampous T, Kay GL, Richardson H, et al. Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection [J]. Nat Biotechnol, 2019, 37(7): 783-792.
|
| 32 |
Shi CL, Han P, Tang PJ, et al. Clinical metagenomic sequencing for diagnosis of pulmonary tuberculosis [J]. J Infect, 2020, 81(4): 567-574.
|
| 33 |
Wang J, Han Y, Feng J. Metagenomic next-generation sequencing for mixed pulmonary infection diagnosis [J]. BMC Pulm Med, 2019, 19(1): 252.
|
| 34 |
Chen X, Cao K, Wei Y, et al. Metagenomic next-generation sequencing in the diagnosis of severe pneumonias caused by Chlamydia psittaci [J]. Infection, 2020, 48(4): 535-542.
|
| 35 |
Su SS, Chen XB, Zhou LP, et al. Diagnostic performance of the metagenomic next-generation sequencing in lung biopsy tissues in patients suspected of having a local pulmonary infection [J]. BMC Pulm Med, 2022, 22(1): 112.
|
| 36 |
Li H, Gao H, Meng H, et al. Detection of pulmonary infectious pathogens from lung biopsy tissues by metagenomic next-generation sequencing [J]. Front Cell Infect Microbiol, 2018, 8: 205.
|
| 37 |
Langelier C, Zinter MS, Kalantar K, et al. Metagenomic sequencing detects respiratory pathogens in hematopoietic cellular transplant patients [J]. Am J Respir Crit Care Med, 2018, 197(4): 524-528.
|
| 38 |
Tarabichi M, Shohat N, Goswami K, et al. Diagnosis of periprosthetic joint infection: the potential of next-generation sequencing [J]. J Bone Joint Surg Am, 2018, 100(2): 147-154.
|
| 39 |
Cai Y, Fang X, Chen Y, et al. Metagenomic next generation sequencing improves diagnosis of prosthetic joint infection by detecting the presence of bacteria in periprosthetic tissues [J]. Int J Infect Dis, 2020, 96: 573-578.
|
| 40 |
Huang ZD, Zhang ZJ, Yang B, et al. Pathogenic detection by metagenomic next-generation sequencing in osteoarticular infections [J]. Front Cell Infect Microbiol, 2020, 10: 471.
|
| 41 |
Tarabichi M, Shohat N, Goswami K, et al. Can next generation sequencing play a role in detecting pathogens in synovial fluid? [J]. Bone Joint J, 2018, 100-B(2): 127-133.
|
| 42 |
Wang C, Huang Z, Li W, et al. Can metagenomic next-generation sequencing identify the pathogens responsible for culture-negative prosthetic joint infection? [J]. BMC Infect Dis, 2020, 20(1): 253.
|
| 43 |
De Waele J, Lipman J, Sakr Y, et al. Abdominal infections in the intensive care unit: characteristics, treatment and determinants of outcome [J]. BMC Infect Dis, 2014, 14: 420.
|
| 44 |
Li D, Gai W, Zhang J, et al. Metagenomic next-generation sequencing for the microbiological diagnosis of abdominal sepsis patients [J]. Front Microbiol, 2022, 13: 816631.
|
| 45 |
Kujiraoka M, Kuroda M, Asai K, et al. Comprehensive diagnosis of bacterial infection associated with acute cholecystitis using metagenomic approach [J]. Front Microbiol, 2017, 8: 685.
|